Introduction
Compatible Libraries
Workflow Requirements
Versions
Reference Genomes
Workflow
Workflow Diagram
Set Analysis Parameters
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Analysis Methods
STAR
Manta
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Bowtie
Bowtie2
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Isaac Variant Caller
Read Filtering
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Introduction
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Workflow Requirements
Workflow Requirements
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Supports 100,000–400,000,000 reads per sample.
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Supports 40 billion reads across all samples in a single analysis.
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Supports 35–500 bp read lengths.
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Requires paired-end reads for fusion detection.
Introduction
Compatible Libraries
Workflow Requirements
Versions
Reference Genomes
Workflow
Workflow Diagram
RNA-Seq Alignment v1.0 Online Help