Introduction | Versions

Versions

The following components are used in the RNA-Seq Alignment App.

Software

Version

Isis (Analysis Software)

2.6.25.11

TopHat (Aligner)

2.1.0

STAR (Aligner)

2.5.0a

Bowtie (Aligner)

0.12.9

Bowtie2 (Aligner)

2.2.6

Isaac Variant Caller

2.3.13-31-g3c98c29

IONA (Annotation Service)

1.0.10.37

BEDTools

2.17.0

Cufflinks

2.2.1

BLAST

2.2.26+