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STAR
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Isaac Variant Caller
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Analysis Methods
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Isaac Variant Caller
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Read Filtering
Read Filtering
Input reads are filtered under the following conditions:
▶
Reads that failed base calling quality checks.
▶
Reads marked as PCR duplicates.
▶
Paired-end reads not marked as a proper pair.
▶
Reads with a mapping quality < 20.
Isaac Variant Caller
Read Filtering
Indel Calling
SNV Calling
Indel Genotypes
Variant Call Output
RNA-Seq Alignment v1.0 Online Help