Splice Variants VCF
File name: {Sample_ID}_SpliceVariants.vcf
Contains all candidate splice variants targeted by the TruSight Tumor 170 v2.0 panel identified by the RNA analysis pipeline.
The following filters can be applied for each variant call.
|
Filter Name |
Description |
|---|---|
|
LowQ |
Splice Variant Score is < the Passing Quality Score threshold value of 1. |
|
PASS |
Splice Variant Score is ≥ to the Passing Quality Score threshold value of 1. |
Each splice variant is annotated using the Illumina Annotation Engine and the following information is captured in the VCF if available:
| • | HGNC Gene |
| • | Transcript |
| • | Exons |
| • | Introns |
| • | Canonical |
| • | Consequence |
See the headers in the output for more information about each column.