Sequencing Software Support

Stage Experimental Design Cluster Generation Instrument Control Image Analysis Base Calling
Q-Scoring
File Conversion Demultiplexing Alignment Variant Calling Variant Counting Visualization Aggregation and Research
Software                
               
               
               
               
           
           
           
             
             
             
             
         
         
         
         
         
             
             
             
             
             
             
             
               
               

 

Experimental Design

Experiment Manager

A graphical user interface for creating and editing well-formed sample sheets and manifest files for Illumina sequencers and analysis software.

 

DesignStudio

An online tool for designing custom assays for various types of projects, including Targeted Resequencing, Gene Expression, and Genotyping.

 

BlueFuse Workflow Manager

Create and edit well-formed sample sheets for MiSeq sequencers and analysis software.

 

 
 

Local Run Manager

A graphical user interface for setting sequencing parameters, recording libraries, and specifying analysis methods.

 
 
 

System Software

HiSeq Control (HCS/RTA) for all HiSeq Systems

Instrument control and real-time analysis software for all HiSeq systems: the HiSeq 1000, HiSeq1500, HiSeq 2000, and HiSeq2500.

HiSeq Control (HCS/RTA) for HiScanSQ

Instrument control and real-time analysis software for the HiScanSQ.

cBot Control

Instrument control software for the cBot cluster generation system.

 
 

Sequencing Control (SCS/RTA) for Genome Analyzer

Instrument control and real-time analysis software for the Genome Analyzer system.

Sequence Analysis Viewer

Viewer that provides quality metrics generated by the real-time analysis software on Illumina sequencing systems.

MiSeq Control (MCS/RTA)

Instrument control and real-time analysis software for the MiSeq.

NextSeq Control (NCS/RTA2)

Instrument control and real-time analysis software for the NextSeq 500.

MiniSeq Control Software

Instrument control and real-time analysis software for the MiniSeq system.

 
 

 

Analysis Software

Local Run Manager

A graphical user interface for setting sequencing parameters, recording libraries, and specifying analysis methods.

BaseSpace Onsite Sequence Hub

The BaseSpace Onsite Sequence Hub System is a local analysis tool for NextSeq data.

TruSight HLA Assign 2.1 RUO Software

The Assign 2.1 TruSight HLA analysis software assists with the assignment of a human leukocyte antigen (HLA) type. 

 

MiSeq Reporter

MiSeq Reporter processes base calls from the on-instrument real-time analysis software.

BaseSpace Sequence Hub

BaseSpace Sequence Hub is a cloud-based analysis tool for NextSeq, MiSeq, and HiSeq data.

Hiseq Analysis Software

Easy to use and fast alignment and variant calling workflows for Nextera Rapid Capture and Whole Genome Sequencing. Features the Isaac software, fastest accurate analysis software on the market.

 

BCL2FASTQ

BCL2FASTQ handles bcl conversion and demultiplexing of both unzipped and zipped bcl files.