Revision History
Introduction
Compatible Libraries
Workflow Requirements
Versions
Reference Genomes
Workflow Diagram
Set Analysis Parameters
Analysis Methods
Isaac Aligner
Candidate Mapping
Mapping Selection
Alignment Scores
Alignment Output
Isaac Somatic Variant Caller
Candidate Indel Search
Realignment
Somatic Caller
Post-Call Filtration
Input Data Filtration
Additional Filtration
Quality Filtration Levels
Input Data
Output Data
Large Indel and Structural Variant Calls
Somatic Genotyping
Pre-Scoring Alignment
Somatic Quality Scores
Somatic Genotyping VCF
Copy Number Variations
Segmentation
Ploidy and Purity Calculation
Analysis Output
Analysis Info
Log Files
Output Files
BAM File Format
VCF File Format
gVCF File Format
Sample Summary Reports
Somatic Analysis Summary
Normal Sample Summary
Tumor Sample Summary
All Files
Introduction
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Workflow Diagram
Workflow Diagram
Figure
Tumor Normal v2.0
App Workflow
Introduction
Compatible Libraries
Workflow Requirements
Versions
Reference Genomes
Workflow Diagram
Tumor Normal v2.0 App Online Help
