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Quality Filtration Levels
Only somatic calls originating from homozygous reference alleles in the normal sample are reviewed for validation and included in the output.
| ▶ | Somatic SNVs are reported if the normal genotype is equal to the reference |
and Q(ssnv+ntype) ≥ 15.
| ▶ | Somatic indels are reported if the normal genotype is equal to the reference |
and Q(somatic indel+ntype) ≥ 30.
NOTE
The value Q(ssnv+ntype) is associated with the VCF key QSS_NT.
The value Q(somatic indel+ntype) is associated with the VCF key QSI_NT.