Analysis Output | Analysis Reports | Summary Report | Summary Plots

Summary Plots

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Table 7 Summary Plots Table
Plot Name	Description
Insert Length Distribution	The plot summarizes the insert length distribution for paired-end reads. The 3 vertical lines of the box represent the quartiles and the whiskers represent the 5^th and 95^th percentiles. The insert length for this box plot is capped at 600 bp.
Alignment Distribution	If a panel is selected, the app calculates the alignment information based on the on-target genes. The plot shows the percentage for the color-coded genomic regions, which include coding, UTR, intron, and non-targeted or intergenic. The app reports "non-targeted" if a panel is selected.
Transcript Coverage	If a panel is selected, the app calculates the alignment information based on the on-target genes. The plot shows the transcript coverage position as reported by the CollectRnaSeqMetrics utility from Picard tools. A vertical bar shows the relative coverage at the position in each row. The numbers between 0 and 100 represents the normalized position along a transcript.