Automatic Analysis QC
You can configure BaseSpace Sequence Hub to automatically apply a QC status to analyses as they complete. BaseSpace Sequence Hub compares the analysis metrics to your predefined thresholds and assigns a dataset or a analysis status as QC Passed or QC Failed.
Automatic Analysis QC uses the BaseSpace Sequence Hub API. For more information, see the developer documentation at developer.basespace.illumina.com.
When a dataset is set to QC failed, its data are excluded from downstream data analyses and total yield calculations.
Automatic Analysis QC uses Analysis Workflows and requires the following:
| • | The app used in the Analysis Workflow must register analysis metrics. |
| • | The Analysis Workflow must be launched automatically. See Biosample Workflow. |
| • | The Analysis Workflow must contain metric thresholds. See Create an Analysis Workflow. |
To view the analysis metrics, select Metrics from the analysis details page. For information about manually applying QC status, see Manual QC.