Processing Copy Number Variant VCF
TruSight Tumor 170 Copy Number Variant VCF variants (non-reference calls) with PASS in the Filter column are copied to the Watson for Genomics output log2 file. The following information is included for each reported CNV variant.
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GeneName — ANT value from INFO column of Copy Number Variant VCF input |
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Database ID — Not used, value is 0 |
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Log2 Ratio — Value is set to 10 for duplication call and -10 for deletion call |
TruSight Tumor 170 + Watson for Genomics Converter v1.0.0 App Online Help
For Research Use Only. Not for use in diagnostic procedures.