Processing Splice Variant VCF

TruSight Tumor 170 Splice variant VCF variants with PASS in the Filter column are copied to the Watson for Genomics output VCF. Information from the following columns of the VCF for the passing variants is included in the output file, using VCF format to represent each splice variant as a deleted sequence.

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CHROM

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POS — Start of splice variant

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REF — Every base between the start and end position of the splice variant

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ALT — First base of the sequence in the REF column of VCF output

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QUAL

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FILTER

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INFO

For Research Use Only. Not for use in diagnostic procedures.