Local Run Manager Software

This page supports on- and off-instrument versions of Local Run Manager. If you sequence AmpliSeq for Illumina panels on the MiniSeq System, visit Local Run Manager for the MiniSeq System Support.


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Custom Protocol Selector

Generate end-to-end documentation tailored to your experiment.

Library Prep and Array Kit Selector

Determine the best kit for your project type, starting material, and method or application.

Sequencing Coverage Calculator

Determine reagents and sequencing runs for your desired coverage.


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Maximize the effectiveness of your Illumina system, train new employees, or learn the latest techniques and best practices. We offer support webinars, online courses, expert video tips, and instructor-led trainings.

Featured Training
Sequencing: Illumina Technology

Overview of the Illumina sequencing workflow, from extracting nucleic acids to completing a sequencing run.

Sequencing: Fundamentals

Overview of DNA and RNA. Compares traditional sequencing methodologies to sequencing by synthesis.

FASTQ Processing Tools for Data Analysis

Descriptions of FASTQ files, generation tools, and file processing. Compares Illumina performance metrics and third-party outputs.