Local Run Manager Software

This support site is for On-Instrument and Off-Instrument versions of Local Run Manager 2.x. MiniSeq customers who are not running AmpliSeq for Illumina panels should visit the Local Run Manager for MiniSeq support site instead.


Off-instrument analysis —The Local Run Manager v2.x software is an off-instrument analysis software that provides tools to analyze sequencing data produced by any Illumina benchtop instrument.

Modular analysis options – Several analysis modules are available to perform analysis procedures designed for various library types. See Compatible Libraries for a description of each module and compatible library types.