• Homepage mini-TOCs
    • Homepage_appTST170v2
    • AnalysisMethods_appTST170v2
      • DNA Sample Metrics Reporting
      • RNA Fusion Filtering
      • RNA Sample Metrics Output
    • AnalysisOutput_appTST170v2
      • Analysis Output
      • Summary
      • Log Files
      • Analysis Reports
    • intro_appTST170v2
      • Introduction
      • Reference Genomes
    • OutputFiles_appTST170v2
      • Files
      • Reports
      • DNA
      • RNA
    • RunApp_appTST170v2
      • Set Analysis Parameters
  • Introduction
    • Workflow Requirements
    • Reference Genomes
    • Workflow Diagrams
  • Set Analysis Parameters
  • Analysis Methods
    • DNA Analysis
      • Inputs Validation
      • Adapter Trimming
      • Alignment
      • Indel Realignment
      • Small Variant Calling
      • Variant Filtering
      • Annotation
      • Complex Variant Calling
      • Copy Number Variants Calling
      • Determining Microsatellite Instability
      • DNA Sample Metrics Reporting
    • RNA Analysis
      • Inputs Validation
      • Down-sampling
      • Adapter Trimming
      • Alignment
      • Fusion Calling
      • RNA Fusion Filtering
      • Splice Variant Calling
      • Fusion Merging
      • Annotation
      • RNA Sample Metrics Reporting
  • Analysis Output
    • Summary
      • Log Files
    • Reports
      • Combined Variant Reports
      • Metrics Output Report
    • Inputs
    • Files
      • File Overview
      • DNA Outputs
      • RNA Outputs
  • All Files
BaseSpace
  • TruSight Tumor 170 v2.0
    App Online Help
  • Contact
  • All Files
Home/
Analysis Output/Reports/Metrics Output Report/DNA Library QC Metrics for MSI

Related articles

  • Metrics Output Report
    • Analysis Details
    • Sample Status
    • DNA Library QC Metrics for Small Variant Calling
    • DNA Library QC Metrics for Copy Number Variant Calling
    • DNA Library QC Metrics for MSI
    • DNA Expanded Metrics
    • RNA Library QC Metrics
    • RNA Expanded Metrics
  • Metrics Output Report
    • Analysis Details
    • Sample Status
    • DNA Library QC Metrics for Small Variant Calling
    • DNA Library QC Metrics for Copy Number Variant Calling
    • DNA Library QC Metrics for MSI
    • DNA Expanded Metrics
    • RNA Library QC Metrics
    • RNA Expanded Metrics

DNA Library QC Metrics for MSI

Metric

Description

Recommended Threshold

Usable MSI Sites

Total number of usable microsatellite sites.

≥ 40

  • Company
  • Career
  • Legal
Innovative technologies

At Illumina, our goal is to apply innovative technologies to the analysis of genetic variation and function, making studies possible that were not even imaginable just a few years ago. It is mission critical for us to deliver innovative, flexible, and scalable solutions to meet the needs of our customers. As a global company that places high value on collaborative interactions, rapid delivery of solutions, and providing the highest level of quality, we strive to meet this challenge. Illumina innovative sequencing and array technologies are fueling groundbreaking advancements in life science research, translational and consumer genomics, and molecular diagnostics.

For Research Use Only. Not for use in diagnostic procedures (except as specifically noted).

Copyright 2017 Illumina, Inc. All rights reserved.