Downloads

If you already have the HiSeq Analysis Software installed, download AmpliconDS rpm without HiSeq Analysis Software (AmpliconDS-AmpDSonly.2.3.32.x86_64.rpm).

If you do not have the HiSeq Analysis Software installed, download AmpliconDS rpm with HiSeq Analysis Software (AmpliconDS-HASandAmpDS.2.3.32.x86_64.rpm).

This download contains an update to the HiSeq Software Suite and includes new versions of HiSeq Control Software (HCS), Real-Time Analysis (RTA), Batch Installer, and the BaseSpace Broker. This software includes support for BaseSpace Onsite (BSO) functionality. BaseSpace v2.0 is required. Download and review the customer release notes for details about this release.

This download contains the software, release notes, and software guide for the bcl2fastq2 Conversion Software v2.19.1, which can be used to both demultiplex data and convert BCL files to FASTQ file formats for downstream analysis. This software requires a Linux operating system.

The bcl2fastq2 Conversion Software v2.19.1 can be used to convert BCL files from MiniSeq, MiSeq, NextSeq, HiSeq, and NovaSeq sequening systems. For conversion of data generated on Illumina sequencing systems using versions of RTA earlier than RTA 1.18.54, use bcl2fastq v1.8.4.

The software is available as an RPM (*.rpm) for installation on CentOS/RedHat Linux distributions. A tarball (*.tar.gz) of the source code is also available for compilation on other Linux distributions. Installation instructions are provided in the Software Guide.

This download contains an update to the HiSeq Control Software (HCS), Real-Time Analysis (RTA) software, Sequencing Analysis Viewing (SAV), and BaseSpace broker software.

Recommended for all HiSeq systems (not compatible with HiScan SQ systems at this time).

ATTENTION: Software installation on HiSeq 1000 and HiSeq 2000 systems when upgrading from HCS 1.5.15.1 or earlier versions must be completed by an Illumina Support representative. Please contact Illumina Technical Support or your Illumina FAS for assistance with the software upgrade. You can install the software without assistance on HiSeq 1500 and HiSeq 2500 systems.

The download contains an update to the HiSeq Software Suite and includes new versions of HiSeq Control Software (HCS), Real-Time Analysis (RTA), Recipe Fragments, Sequencing Analysis Viewer (SAV), and the BaseSpace Broker. This software includes support for Rapid Run mode using HiSeq Rapid v2 chemistry and an update to the maintenance wash to support only maintenance wash solution (Tween 20 and ProClin 300) protocol. This software is for all HiSeq systems except HiSeq X and HiScanSQ. Download and review the customer release notes for details about this release.

This download contains an update to the HiSeq Software Suite and includes new versions of HiSeq Control Software (HCS), Real-Time Analysis (RTA), Recipe Fragments, Sequencing Analysis Viewer (SAV), and the BaseSpace Broker. This software is for all HiSeq systems except HiSeq X and HiScanSQ. Download and review the customer release notes for details about this release. This package is customer installable, but review the installation notes to make sure that your system meets the requirements for this update.