Local Run Manager Vulnerability Correction

This is the software correction for the Local Run Manager security vulnerability of which customers were informed and a temporary security patch was provided in May 2022.

The following table lists the impacted instruments and the required actions for each instrument. Note that all prior versions of control software which utilize Local Run Manager will no longer be available for distribution by Illumina once the software versions listed below are released.

Upon completion of the successful software upgrade, follow Illumina Cybersecurity best practices, including confirming that the firewall is enabled, and Universal Copy Service is running as a standard user.

Impacted Instruments and Actions to Take
Instrument Action Release Date
iScan None N/A
iSeq 100 User to update to iSeq Control Software v3.1 and available Local Run Manager modules (Refer to Additional Information below). March 13, 2024
MiniSeq User to update to Miniseq Control Software v2.3 and available Local Run Manager modules (Refer to Additional Information below). March 13,2024
MiSeq User to update to MiSeq Control Software v4.1 and available Local Run Manager modules. (Refer to Additional Information below.) November 28, 2023
MiSeqDx Illumina Field Support to update to MiSeqDx Operating Software v4.1 and available Local Run Manager modules. (Refer to Additional Information below.) November 28, 2023
NextSeq 500 / NextSeq 550 Illumina Field Support to update NextSeq Control Software v4.2 and available Local Run Manager modules. (Refer to Additional Information below.) May 31, 2023
NextSeq 550Dx Illumina Field Support to update NextSeqDx Operating Software v1.7 and available Local Run Manager modules (Refer to Additional Information below.) October 25, 2023
NextSeq 1000 / NextSeq 2000 None N/A
NovaSeq 6000 None N/A
NovaSeq 6000Dx None N/A
NovaSeq X None N/A

Additional Information
The new version of MiSeq Control Software is user-installable, Illumina Field Service is not required. Install the MiSeq Control Software v4.1 on your MiSeq by browsing to the Illumina support site and following the installation instructions provided. Release notes can also be found on the aforementioned Illumina support site. If your MiSeq instrument is on Windows 7, an Illumina Field Service visit is required to upgrade to Windows 10 and the new MiSeq Control Software.

 

NOTE: MyIllumina log-in is required. For MyIllumina log-in support, contact Illumina Customer Care.

 

Local Run Manager Modules Compatibility and Availability
MiSeq Module Compatible Version with MiSeq Control Software v4.1 Availability
16s Metagenomics
v2.0.0.5 Modules available on the Illumina Support Site.
Amplicon DS v3.0.0.56
Assembly v2.0.1.2
DNA Amplicon v3.0.1.1
DNA Enrichment v3.1.0.1090
GenerateFASTQ v3.1.0.35
Library QC v2.2.0.17
PCR Amplicon v2.0.0.3
Resequencing v3.0.1.13
RNA Amplicon v3.0.0.26
RNA Fusion v3.0.0.25
Small RNA v3.0.0.24
TruSight Tumor (TST15) TBD Planned for Q2 2024

Refer to the following editable PDFs of the recall verification forms. Return the completed form to techsupport@illumina.com to acknowledge receipt of the notification and completion of software update.

Form Description
PQN2023-1454 MiSeq Local Run Manager Update - English Verification Form: English
PQN2023-1454 MiSeq Local Run Manager Update – Arabic Verification Form: Arabic
PQN2023-1454 MiSeq Local Run Manager Update – Bulgarian Verification Form: Bulgarian
PQN2023-1454 MiSeq Local Run Manager Update – Czech Verification Form: Czech
PQN2023-1454 MiSeq Local Run Manager Update – Dutch Verification Form: Dutch
PQN2023-1454 MiSeq Local Run Manager Update – Danish Verification Form: Danish
PQN2023-1454 MiSeq Local Run Manager Update – Finnish Verification Form: Finnish
PQN2023-1454 MiSeq Local Run Manager Update – French Verification Form: French
PQN2023-1454 MiSeq Local Run Manager Update – German Verification Form: German
PQN2023-1454 MiSeq Local Run Manager Update – Greek Verification Form: Greek
PQN2023-1454 MiSeq Local Run Manager Update – Hungarian Verification Form: Hungarian
PQN2023-1454 MiSeq Local Run Manager Update – Italian Verification Form: Italian
PQN2023-1454 MiSeq Local Run Manager Update – Latvian Verification Form: Latvian
PQN2023-1454 MiSeq Local Run Manager Update – Lithuanian Verification Form: Lithuanian
PQN2023-1454 MiSeq Local Run Manager Update – Norwegian Verification Form: Norwegian
PQN2023-1454 MiSeq Local Run Manager Update – Polish Verification Form: Polish
PQN2023-1454 MiSeq Local Run Manager Update – Portuguese Verification Form: Portuguese
PQN2023-1454 MiSeq Local Run Manager Update – Romanian Verification Form: Romanian
PQN2023-1454 MiSeq Local Run Manager Update – Slovak Verification Form: Slovak
PQN2023-1454 MiSeq Local Run Manager Update – Slovene Verification Form: Slovene
PQN2023-1454 MiSeq Local Run Manager Update – Spanish Verification Form: Spanish
PQN2023-1454 MiSeq Local Run Manager Update – Swedish Verification Form: Swedish
PQN2023-1454 MiSeq Local Run Manager Update – Turkish Verification Form: Turkish
Software installation requires onsite Illumina support. An Illumina Field Representative will contact you to schedule an onsite visit to install the MiSeqDx Operating Software v4.1 (release notes) and the MiSeq Control Software v4.1 (release notes).

 

Local Run Manager Modules Compatibility and Availability
MiSeqDx Module Compatible Version with MiSeqDx Control Software v4.1 Availability
CF 139-Variant 2.0
v1.0.1.124 Installed by Illumina Field Representative.
CF 139-Variant 2.0 Micro v1.0.0.113
CF Clinical Seq 2.0 v1.0.1.96
CF Clinical Seq 2.0 Micro v1.0.0.70
DNA GenerateFASTQ Dx v1.0.0.299
Germline Variant v2.0.0.36
Somatic Variant v2.0.0.12
Software Installation requires onsite Illumina support. An Illumina Field Representative will contact you to schedule an onsite visit to install NextSeq Control Software v4.2.0 (release notes).

 

Local Run Manager Modules Compatibility and Availability
NextSeq 550 Module Description Compatible Version with NextSeq Control Software v4.2 Availability
16s Metagenomics
v2.0.0.5 Modules available on the Illumina Support Site.
Amplicon DS v3.0.0.56
Assembly v2.0.1.2
DNA Amplicon v3.0.1.1
DNA Enrichment v3.1.0.1090
GenerateFASTQ v3.1.0.35
Library QC v2.2.0.17
PCR Amplicon v2.0.0.3
Resequencing v3.0.1.13
RNA Amplicon v3.0.0.26
RNA Fusion v3.0.0.25
Small RNA v3.0.0.24
TruSight Oncology 500 v2.3 Planned for Q3 2023
VeriSeq NIPT v1.0.4.3 Planned for Q4 2023
Software installation requires onsite Illumina support. An Illumina Field Representative will contact you to schedule an onsite visit to install NextSeqDx Operating Software v 1.7 (release notes) and NextSeq Control Software v4.2 (release notes).

 

Local Run Manager Modules Compatibility and Availability
NextSeq 550Dx Module  Compatible Version with NextSeq 550Dx Operating Software v1.7 Availability
DNA GenerateFASTQ Dx v1.0.0.299 Modules available on the Illumina Support Site.
Germline Variant v1.3.0.0
Somatic Variant v1.3.0.0
VeriSeq NIPT v1.1.2.601
TruSight Oncology Comp IVD v2.3.7 (IVDD) Planned for Q4 2023

Refer to the following editable PDFs of the recall verification forms. Return the completed form to techsupport@illumina.com to acknowledge receipt of the notification.

Form Description
FSN2023-1450 NextSeqDx Local Run Manager Update - Verification Verification Form: Standard Form
Product Defect Correction Notice (RC-2023-RN-00842-1) Verification Form: Australia
PQN2023-1451 NextSeqDx Local Run Manager Update for Japan and Korea-Verification  Verification Form: Japan and Korea
FSN2023-1450 NextSeqDx Local Run Manager Update - NZ -Verification Verification Form: New Zealand
FSN2023-1450 NextSeqDx Local Run Manager Update for Portugal – Verification Verification Form: Portugal
FSN2023-1450 NextSeqDx Local Run Manager Update Singapore-Verification Verification Form: Singapore
The new version of iSeq100 Control Software is user-installable; Illumina field service is not required. Install the iSeq100 Control Software v3.1 on your iSeq100 by browsing to the Illumina support site. The page contains the software installer and the document containing software release notes (pages 1-3) and upgrade installation instructions (pages 4-12).

 

NOTE: MyIllumina log-in is required. For MyIllumina log-in support, contact Illumina Customer Care.

 

For instruments under an Advanced Exchange Support Plan, onsite field service is not available.

 

Local Run Manager Modules Compatibility and Availability
iSeq Module Compatible Version with iSeq Control Software v3.1 Availability
16s Metagenomics
v2.0.0.5 Modules available on the Illumina Support Site.
Amplicon DS v3.0.0.56
Assembly v2.0.1.2
DNA Amplicon v3.0.1.1
DNA Enrichment v3.1.0.1090
GenerateFASTQ v3.1.0.35
Library QC v2.2.0.17
PCR Amplicon v2.0.0.3
Resequencing v3.0.1.13
RNA Amplicon v3.0.0.26
RNA Fusion v3.0.0.25
Small RNA v3.0.0.24

Refer to the following editable PDFs of the recall verification forms. Return the completed form to techsupport@illumina.com to acknowledge receipt of the notification.

Form Description
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update- English Verification Form: English
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Arabic Verification Form: Arabic
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Bulgarian Verification Form: Bulgarian
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Czech Verification Form: Czech
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Dutch Verification Form: Dutch
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Danish Verification Form: Danish
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Finnish Verification Form: Finnish
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – French Verification Form: French
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – German Verification Form: German
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Greek Verification Form: Greek
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Hungarian Verification Form: Hungarian
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Italian Verification Form: Italian
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Latvian Verification Form: Latvian
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Lithuanian Verification Form: Lithuanian
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Norwegian Verification Form: Norwegian
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Polish Verification Form: Polish
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Portuguese Verification Form: Portuguese
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Romanian Verification Form: Romanian
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Slovak Verification Form: Slovak
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Slovene Verification Form: Slovene
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Spanish Verification Form: Spanish
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Swedish Verification Form: Swedish
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Turkish Verification Form: Turkish
The new version of Miniseq Control Software is user-installable; Illumina field service is not required. Install the Miniseq Control Software v2.3 on your Miniseq by browsing to the Illumina support site. The page contains the software installer and the document containing software release notes (pages 1-4) and upgrade installation instructions (pages 5-15).

 

NOTE: MyIllumina log-in is required. For MyIllumina log-in support, contact Illumina Customer Care.

 

Local Run Manager Modules Compatibility and Availability
MiniSeq Module  Compatible Version with MiniSeq Control Software v2.3 Availability
16s Metagenomics
v2.0.0.5 Modules available on the Illumina Support Site.
Amplicon DS v3.0.0.56
Assembly v2.0.1.2
DNA Amplicon v3.0.1.1
DNA Enrichment v3.1.0.1090
GenerateFASTQ v3.1.0.35
Library QC v2.2.0.17
PCR Amplicon v2.0.0.3
Resequencing v3.0.1.13
RNA Amplicon v3.0.0.26
RNA Fusion v3.0.0.25
Small RNA v3.0.0.24
TruSight Tumor (TST15) TBD Planned for Q2 2024

Refer to the following editable PDFs of the recall verification forms. Return the completed form to techsupport@illumina.com to acknowledge receipt of the notification.

Form Description
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update- English Verification Form: English
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Arabic Verification Form: Arabic
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Bulgarian Verification Form: Bulgarian
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Czech Verification Form: Czech
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Dutch Verification Form: Dutch
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Danish Verification Form: Danish
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Finnish Verification Form: Finnish
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – French Verification Form: French
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – German Verification Form: German
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Greek Verification Form: Greek
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Hungarian Verification Form: Hungarian
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Italian Verification Form: Italian
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Latvian Verification Form: Latvian
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Lithuanian Verification Form: Lithuanian
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Norwegian Verification Form: Norwegian
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Polish Verification Form: Polish
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Portuguese Verification Form: Portuguese
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Romanian Verification Form: Romanian
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Slovak Verification Form: Slovak
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Slovene Verification Form: Slovene
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Spanish Verification Form: Spanish
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Swedish Verification Form: Swedish
PQN2024-1496 iSeq and MiniSeq Local Run Manager Cybersecurity Vulnerability Update – Turkish Verification Form: Turkish