MiSeq Support


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Custom Protocol Selector

Generate end-to-end documentation tailored to your experiment.

Library Prep and Array Kit Selector

Determine the best kit for your project type, starting material, and method or application.

Sequencing Coverage Calculator

Determine reagents and sequencing runs for your desired coverage.


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Maximize the effectiveness of your Illumina system, train new employees, or learn the latest techniques and best practices. We offer support webinars, online courses, expert video tips, and instructor-led trainings.

Featured Training
MiSeq: How to Start a Run

Overview of MiSeq run setup options, how to prepare the MiSeq reagent cartridge and load libraries, and the steps to start a sequencing run with MiSeq Control Software (MCS).

Amplicon and 16S Metagenomics Sequencing: Introduction

Overview of what defines an amplicon library, kits and protocols for amplicon libraries, and amplicon sequencing runs and parameters.

Is My HiSeq or MiSeq Run Overclustered?

How to use Sequencing Analysis Viewer (SAV) to look for common symptoms of an overclustered HiSeq or MiSeq flow cell.