MiSeq Support


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Local Run Manager Module Selector

Find the analysis modules compatible with your instrument and Local Run Manager configuration.

Library Prep and Array Kit Selector

Determine the best kit for your project type, starting material, and method or application.

Sequencing Coverage Calculator

Determine reagents and sequencing runs for your desired coverage.


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Maximize the effectiveness of your Illumina system, train new employees, or learn the latest techniques and best practices. We offer support webinars, online courses, expert video tips, and instructor-led trainings.

Featured Training
MiSeq: How to Start a Run

Overview of MiSeq run setup options, how to prepare the MiSeq reagent cartridge and load libraries, and the steps to start a sequencing run with MiSeq Control Software (MCS).

Local Run Manager v3

This course shows you how to get started using the Local Run Manager v3 software to set up your sequencing runs and view analysis results.

Sequencing: Optimizing Cluster Density

Learn tips to optimize cluster density.