MiSeq Support


View All
Custom Protocol Selector

Generate end-to-end documentation tailored to your experiment.

Library Prep and Array Kit Selector

Determine the best kit for your project type, starting material, and method or application.

Local Run Manager Module Selector

Find the analysis modules compatible with your instrument and Local Run Manager configuration.

Sequencing Coverage Calculator

Determine reagents and sequencing runs for your desired coverage.


View All

Maximize the effectiveness of your Illumina system, train new employees, or learn the latest techniques and best practices. We offer support webinars, online courses, expert video tips, and instructor-led trainings.

Featured Training
MiSeq: How to Start a Run

Overview of MiSeq run setup options, how to prepare the MiSeq reagent cartridge and load libraries, and the steps to start a sequencing run with MiSeq Control Software (MCS).

Metagenomics Sequencing: Introduction

Discusses the end-to-end workflow for a metagenomics sequencing project.

Is My HiSeq or MiSeq Run Overclustered?

How to use Sequencing Analysis Viewer (SAV) to look for common symptoms of an overclustered HiSeq or MiSeq flow cell.