BaseSpace Compatible Products

16S Metagenomics 

The 16S Metagenomics App performs taxonomic classification of 16S rRNA targeted amplication reads. 

Compatible Libraries

Amplicon DS App

Designed specifically for dual-strand targeted resequencing assays, the Amplicon DS App aligns reads against the reference specified in the manifest file, and then performs variant analysis.

Compatible Libraries

BWA Enrichment App

The BWA Enrichment App aligns reads against the whole genome reference, and then performs variant analysis for regions of interest specified in the manifest file.

Compatible Libraries

BWA Whole Genome Sequencing App

Intended for whole-genome sequencing of small genomes, the BWA Whole Genome Sequencing App aligns reads against the specified reference, and then performs variant analysis.

Compatible Libraries

Enrichment App

The Enrichment App (formerly known as Isaac Enrichment) analyzes DNA that are enrinched for particular target sequences, aligns reads against the specific reference, and then performs variant analysis for regions of interest specified in the manifest file.

Compatible Libraries

Isaac Whole Genome Sequencing App

Intended for whole-genome sequencing of small genomes, the Isaac Whole Genome Sequencing App aligns reads against the specified reference, and then performs variant analysis.

Compatible Libraries

RNA Express App

The RNA Express App aligns RNA-sequencing reads against specified genes and performs differential expression.

Compatible Libraries

RNA-Seq Alignment App

The RNA-Seq Alignment app aligns RNA-sequencing reads against the specific reference, performs variant analysis, gene fusion detection, and novel script assembly using the Cufflinks Assembly & DE App. 

Compatible Libraries

Small RNA App

The Small RNA App aligns reads against databases for contaminants, mature miRNA, small RNA, and a genomic reference, and then measures abundance of short RNA sequences.

Compatible Libraries

Targeted RNA App

The Targeted RNA App aligns reads specified in the manifest file, quantifies the relative expression of genes and isoforms between samples, and then compares abundance across samples.

Compatible Libraries

TopHat and Cufflinks RNA-Seq App

The TopHat Alignment and Cufflinks Assembly App aligns RNA-sequencing reads against the specific reference, performs variant analysis, and estimates reference genes and transcript abundance. 

Compatible Libraries

TruSeq Amplicon App

The TruSeq Amplicon App aligns reads against the reference specified in the manifest file, and then performs variant analysis.

Compatible Libraries

TruSeq Long Reads Assembly

The TruSeq Long Reads Assembly App generates libraries for long-read sequencing and assembles high-quality synthetic long-read fragments.

Compatible Libraries

TruSeq Phasing App

The TruSeq Phasing App performs whole human genome phasin and enables the generation of haplotype fragments for allele-specific analysis. 

Compatible Libraries

TruSight Tumor 15 App

The TruSight Tumor 15 App aligns reads specified in the manifest file, and then reports somatic variants of a set of reference panel genes associated with cancer.

Compatible Libraries

Tumor Normal App

The Tumor Normal detects somatic variants from a matched pair of tumor and normal samples. 

Compatible Libraries

TruSeq Nano DNA HT

TruSeq DNA PCR-Free HT

Nextera XT

Nextera XT

Nextera Mate Pair

Nextera DNA

TruSeq Nano DNA HT

TruSeq DNA PCR-Free HT

TruSeq Nano DNA HT

TruSeq DNA PCR-Free HT

Nextera DNA